Index

_

__list_tree_df() (mtbp3cd.util.ltr.ListTree method) __list_tree_pre() (mtbp3cd.util.ltr.ListTree method) __version__ (in module mtbp3cd) _file_to_df() (in module mtbp3cd.util.gt03define) _p (mtbp3cd.gui.gt01o_record.TabRecord attribute) (mtbp3cd.gui.gt01r_inputfolder.TabFolder attribute) (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03o_define.TabDefine attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute)

_ROOT (in module mtbp3cd) (in module mtbp3cd.util)

A

all_buttons (mtbp3cd.gui.appclinicaldata.MainWedge attribute) (mtbp3cd.gui.appfileinventory.MainWedge attribute) (mtbp3cd.gui.MainWedge attribute), [1] (mtbp3cd.MainWedge attribute)

app (in module mtbp3cd) (in module mtbp3cd.gui), [1] (in module mtbp3cd.gui.appclinicaldata) (in module mtbp3cd.gui.appfileinventory)

B

boxplot() (mtbp3cd.util.gt03plot.catPlotter method)

C

catPlotter (class in mtbp3cd.util.gt03plot) checksum_type (mtbp3cd.gui.gt01o_checksum.TabChecksum attribute) ClinicalDataApp (class in mtbp3cd) (class in mtbp3cd.gui) (class in mtbp3cd.gui.appclinicaldata)

color_str() (in module mtbp3cd.util.ltr) count_str (mtbp3cd.LsrTree attribute) (mtbp3cd.util.lsr.LsrTree attribute) (mtbp3cd.util.LsrTree attribute) crosstab_from_lists() (in module mtbp3cd.util.gt03summary)

D

DefaultTableWidget (class in mtbp3cd.gui.gt03o_define) DefineXML (class in mtbp3cd.util.gt03define)

df (mtbp3cd.util.gt03plot.catPlotter attribute) (mtbp3cd.util.ltr.ListTree attribute)

F

fig_size_0 (mtbp3cd.util.gt03plot.catPlotter attribute) fig_size_1 (mtbp3cd.util.gt03plot.catPlotter attribute) FileInventoryApp (class in mtbp3cd) (class in mtbp3cd.gui) (class in mtbp3cd.gui.appfileinventory)

find_domain_files() (in module mtbp3cd.util.gt03define)

G

generate_example_dataset() (mtbp3cd.util.gt03plot.catPlotter static method) geo_mean_sd_by_group() (in module mtbp3cd.util.gt03summary) get_data() (in module mtbp3cd) (in module mtbp3cd.util) get_md5() (mtbp3cd.LsrTree static method) (mtbp3cd.util.lsr.LsrTree static method) (mtbp3cd.util.LsrTree static method)

grid_col (mtbp3cd.util.gt03plot.catPlotter attribute) grid_kws (mtbp3cd.util.gt03plot.catPlotter attribute) grid_wrap (mtbp3cd.util.gt03plot.catPlotter attribute) group_col (mtbp3cd.util.gt03plot.catPlotter attribute) gt01_output_folder_path (mtbp3cd.gui.gt01r_starting.TabStarting attribute)

I

ig_desc (mtbp3cd.util.gt03define.DefineXML attribute) ig_it_desc (mtbp3cd.util.gt03define.DefineXML attribute)

ig_structure (mtbp3cd.util.gt03define.DefineXML attribute) infmt (mtbp3cd.util.ltr.ListTree attribute)

L

label (mtbp3cd.util.ltr.ListTree attribute) line_color_col (mtbp3cd.util.gt03plot.catPlotter attribute) lineplot() (mtbp3cd.util.gt03plot.catPlotter method) list_files() (mtbp3cd.LsrTree method) (mtbp3cd.util.lsr.LsrTree method) (mtbp3cd.util.LsrTree method) list_files_dataframe() (mtbp3cd.LsrTree method) (mtbp3cd.util.lsr.LsrTree method) (mtbp3cd.util.LsrTree method) list_files_json() (mtbp3cd.LsrTree method) (mtbp3cd.util.lsr.LsrTree method) (mtbp3cd.util.LsrTree method) list_files_list() (mtbp3cd.LsrTree method) (mtbp3cd.util.lsr.LsrTree method) (mtbp3cd.util.LsrTree method)

list_files_string() (mtbp3cd.LsrTree method) (mtbp3cd.util.lsr.LsrTree method) (mtbp3cd.util.LsrTree method) list_files_tree() (mtbp3cd.LsrTree method) (mtbp3cd.util.lsr.LsrTree method) (mtbp3cd.util.LsrTree method) list_tree() (mtbp3cd.util.ltr.ListTree method) ListTree (class in mtbp3cd.util.ltr) LsrTree (class in mtbp3cd) (class in mtbp3cd.util) (class in mtbp3cd.util.lsr) lst (mtbp3cd.util.ltr.ListTree attribute)

M

main_widget (mtbp3cd.ClinicalDataApp attribute) (mtbp3cd.FileInventoryApp attribute) (mtbp3cd.gui.appclinicaldata.ClinicalDataApp attribute) (mtbp3cd.gui.appfileinventory.FileInventoryApp attribute) (mtbp3cd.gui.ClinicalDataApp attribute) (mtbp3cd.gui.FileInventoryApp attribute) MainWedge (class in mtbp3cd) (class in mtbp3cd.gui), [1] (class in mtbp3cd.gui.appclinicaldata) (class in mtbp3cd.gui.appfileinventory) message_list (mtbp3cd.gui.gt01o_record.TabRecord attribute) (mtbp3cd.gui.gt01r_inputfolder.TabFolder attribute) (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03o_define.TabDefine attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute) meta (mtbp3cd.util.gt03define.DefineXML attribute) module mtbp3cd mtbp3cd.data mtbp3cd.gui mtbp3cd.gui.appclinicaldata mtbp3cd.gui.appfileinventory mtbp3cd.gui.gt01o_checksum mtbp3cd.gui.gt01o_record mtbp3cd.gui.gt01r_inputfolder mtbp3cd.gui.gt01r_starting mtbp3cd.gui.gt03o_adsl mtbp3cd.gui.gt03o_define mtbp3cd.gui.gt03r_inputfolder mtbp3cd.util mtbp3cd.util.gt03define mtbp3cd.util.gt03plot mtbp3cd.util.gt03summary mtbp3cd.util.lsr mtbp3cd.util.ltr

mtbp3cd module mtbp3cd.data module mtbp3cd.gui module mtbp3cd.gui.appclinicaldata module mtbp3cd.gui.appfileinventory module mtbp3cd.gui.gt01o_checksum module mtbp3cd.gui.gt01o_record module mtbp3cd.gui.gt01r_inputfolder module mtbp3cd.gui.gt01r_starting module mtbp3cd.gui.gt03o_adsl module mtbp3cd.gui.gt03o_define module mtbp3cd.gui.gt03r_inputfolder module mtbp3cd.util module mtbp3cd.util.gt03define module mtbp3cd.util.gt03plot module mtbp3cd.util.gt03summary module mtbp3cd.util.lsr module mtbp3cd.util.ltr module

O

outfmt (mtbp3cd.LsrTree attribute) (mtbp3cd.util.lsr.LsrTree attribute) (mtbp3cd.util.LsrTree attribute)

P

path (mtbp3cd.LsrTree attribute) (mtbp3cd.util.lsr.LsrTree attribute) (mtbp3cd.util.LsrTree attribute)

pd_df_flag_to_category() (in module mtbp3cd.util.gt03summary) point_position (mtbp3cd.util.gt03plot.catPlotter attribute) prelst (mtbp3cd.util.ltr.ListTree attribute) pt_size (mtbp3cd.util.gt03plot.catPlotter attribute)

R

read() (mtbp3cd.util.gt03define.DefineXML method)

runapp() (in module mtbp3cd) (in module mtbp3cd.gui)

S

selected_checksum_file (mtbp3cd.gui.gt01o_checksum.TabChecksum attribute) sidebar_button_ad_define (mtbp3cd.gui.appclinicaldata.MainWedge attribute) (mtbp3cd.gui.MainWedge attribute) sidebar_button_ad_define_f() (mtbp3cd.gui.appclinicaldata.MainWedge method) (mtbp3cd.gui.MainWedge method) sidebar_button_adsl (mtbp3cd.gui.appclinicaldata.MainWedge attribute) (mtbp3cd.gui.MainWedge attribute) sidebar_button_adsl_f() (mtbp3cd.gui.appclinicaldata.MainWedge method) (mtbp3cd.gui.MainWedge method) sidebar_button_checksum (mtbp3cd.gui.appfileinventory.MainWedge attribute) (mtbp3cd.gui.MainWedge attribute) (mtbp3cd.MainWedge attribute) sidebar_button_checksum_f() (mtbp3cd.gui.appfileinventory.MainWedge method) (mtbp3cd.gui.MainWedge method) (mtbp3cd.MainWedge method) sidebar_button_folder (mtbp3cd.gui.appfileinventory.MainWedge attribute) (mtbp3cd.gui.MainWedge attribute) (mtbp3cd.MainWedge attribute) sidebar_button_folder_f() (mtbp3cd.gui.appfileinventory.MainWedge method) (mtbp3cd.gui.MainWedge method) (mtbp3cd.MainWedge method)

sidebar_button_input (mtbp3cd.gui.appclinicaldata.MainWedge attribute) (mtbp3cd.gui.MainWedge attribute) sidebar_button_input_f() (mtbp3cd.gui.appclinicaldata.MainWedge method) (mtbp3cd.gui.MainWedge method) sidebar_button_record (mtbp3cd.gui.appfileinventory.MainWedge attribute) (mtbp3cd.gui.MainWedge attribute) (mtbp3cd.MainWedge attribute) sidebar_button_record_f() (mtbp3cd.gui.appfileinventory.MainWedge method) (mtbp3cd.gui.MainWedge method) (mtbp3cd.MainWedge method) sidebar_button_starting (mtbp3cd.gui.appclinicaldata.MainWedge attribute) (mtbp3cd.gui.appfileinventory.MainWedge attribute) (mtbp3cd.gui.MainWedge attribute), [1] (mtbp3cd.MainWedge attribute) sidebar_button_starting_f() (mtbp3cd.gui.appclinicaldata.MainWedge method) (mtbp3cd.gui.appfileinventory.MainWedge method) (mtbp3cd.gui.MainWedge method), [1] (mtbp3cd.MainWedge method) style_btn_clicked (in module mtbp3cd) (in module mtbp3cd.gui)

T

tab_ad_desc (mtbp3cd.gui.gt03o_define.TabDefine attribute) tab_ad_desc_table (mtbp3cd.gui.gt03o_define.TabDefine attribute) tab_ad_flag (mtbp3cd.gui.gt03o_define.TabDefine attribute) tab_ad_flag_table (mtbp3cd.gui.gt03o_define.TabDefine attribute) tab_ad_igdef (mtbp3cd.gui.gt03o_define.TabDefine attribute) tab_ad_igdef_table (mtbp3cd.gui.gt03o_define.TabDefine attribute) tab_ad_meta (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03o_define.TabDefine attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute) tab_ad_meta_table (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03o_define.TabDefine attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute) tab_ad_tree (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute) tab_ad_tree_str (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute) tab_adsl (mtbp3cd.gui.appclinicaldata.MainWedge attribute) (mtbp3cd.gui.MainWedge attribute) tab_button_1 (mtbp3cd.gui.gt01o_checksum.TabChecksum attribute) (mtbp3cd.gui.gt01o_record.TabRecord attribute) (mtbp3cd.gui.gt01r_inputfolder.TabFolder attribute) (mtbp3cd.gui.gt01r_starting.TabStarting attribute) (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03o_define.TabDefine attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute) tab_button_1_f() (mtbp3cd.gui.gt01o_checksum.TabChecksum method) (mtbp3cd.gui.gt01o_record.TabRecord method) (mtbp3cd.gui.gt01r_inputfolder.TabFolder method) (mtbp3cd.gui.gt01r_starting.TabStarting method) (mtbp3cd.gui.gt03o_adsl.TabADSL method) (mtbp3cd.gui.gt03o_define.TabDefine method) (mtbp3cd.gui.gt03r_inputfolder.TabInput method) tab_button_2 (mtbp3cd.gui.gt01o_checksum.TabChecksum attribute) (mtbp3cd.gui.gt01o_record.TabRecord attribute) (mtbp3cd.gui.gt01r_inputfolder.TabFolder attribute) (mtbp3cd.gui.gt01r_starting.TabStarting attribute) (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03o_define.TabDefine attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute) tab_button_2_f() (mtbp3cd.gui.gt01o_checksum.TabChecksum method) (mtbp3cd.gui.gt01o_record.TabRecord method) (mtbp3cd.gui.gt01r_inputfolder.TabFolder method) (mtbp3cd.gui.gt01r_starting.TabStarting method) (mtbp3cd.gui.gt03o_adsl.TabADSL method) (mtbp3cd.gui.gt03o_define.TabDefine method) (mtbp3cd.gui.gt03r_inputfolder.TabInput method) tab_button_2_label (mtbp3cd.gui.gt01r_starting.TabStarting attribute) tab_button_3 (mtbp3cd.gui.gt01o_checksum.TabChecksum attribute) (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03o_define.TabDefine attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute) tab_button_3_f() (mtbp3cd.gui.gt01o_checksum.TabChecksum method) (mtbp3cd.gui.gt03o_adsl.TabADSL method) (mtbp3cd.gui.gt03o_define.TabDefine method) (mtbp3cd.gui.gt03r_inputfolder.TabInput method) tab_checksum (mtbp3cd.gui.appfileinventory.MainWedge attribute) (mtbp3cd.gui.MainWedge attribute) (mtbp3cd.MainWedge attribute) tab_define (mtbp3cd.gui.appclinicaldata.MainWedge attribute) (mtbp3cd.gui.MainWedge attribute) tab_folder (mtbp3cd.gui.appfileinventory.MainWedge attribute) (mtbp3cd.gui.MainWedge attribute) (mtbp3cd.MainWedge attribute)

tab_input (mtbp3cd.gui.appclinicaldata.MainWedge attribute) (mtbp3cd.gui.MainWedge attribute) tab_input1 (mtbp3cd.gui.gt01r_starting.TabStarting attribute) tab_list (mtbp3cd.gui.gt01r_inputfolder.TabFolder attribute) tab_list_str (mtbp3cd.gui.gt01r_inputfolder.TabFolder attribute) tab_meta (mtbp3cd.gui.gt01r_inputfolder.TabFolder attribute) tab_meta_table (mtbp3cd.gui.gt01r_inputfolder.TabFolder attribute) tab_record (mtbp3cd.gui.appfileinventory.MainWedge attribute) (mtbp3cd.gui.MainWedge attribute) (mtbp3cd.MainWedge attribute) tab_sd_desc (mtbp3cd.gui.gt03o_define.TabDefine attribute) tab_sd_desc_table (mtbp3cd.gui.gt03o_define.TabDefine attribute) tab_sd_flag (mtbp3cd.gui.gt03o_define.TabDefine attribute) tab_sd_flag_table (mtbp3cd.gui.gt03o_define.TabDefine attribute) tab_sd_igdef (mtbp3cd.gui.gt03o_define.TabDefine attribute) tab_sd_igdef_table (mtbp3cd.gui.gt03o_define.TabDefine attribute) tab_sd_meta (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03o_define.TabDefine attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute) tab_sd_meta_table (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03o_define.TabDefine attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute) tab_sd_tree (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute) tab_sd_tree_str (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute) tab_starting (mtbp3cd.gui.appclinicaldata.MainWedge attribute) (mtbp3cd.gui.appfileinventory.MainWedge attribute) (mtbp3cd.gui.MainWedge attribute), [1] (mtbp3cd.MainWedge attribute) tab_table (mtbp3cd.gui.gt01r_inputfolder.TabFolder attribute) tab_table_qttable (mtbp3cd.gui.gt01r_inputfolder.TabFolder attribute) tab_tabs (mtbp3cd.gui.gt01o_checksum.TabChecksum attribute) (mtbp3cd.gui.gt01o_record.TabRecord attribute) tab_tabs_table_1 (mtbp3cd.gui.gt01o_record.TabRecord attribute) tab_tabs_table_2 (mtbp3cd.gui.gt01o_record.TabRecord attribute) tab_tabs_table_3 (mtbp3cd.gui.gt01o_record.TabRecord attribute) tab_tabs_text_1 (mtbp3cd.gui.gt01o_checksum.TabChecksum attribute) tab_tree (mtbp3cd.gui.gt01r_inputfolder.TabFolder attribute) tab_tree_str (mtbp3cd.gui.gt01r_inputfolder.TabFolder attribute) TabADSL (class in mtbp3cd.gui.gt03o_adsl) TabChecksum (class in mtbp3cd.gui.gt01o_checksum) TabDefine (class in mtbp3cd.gui.gt03o_define) TabFolder (class in mtbp3cd.gui.gt01r_inputfolder) TabInput (class in mtbp3cd.gui.gt03r_inputfolder) TabRecord (class in mtbp3cd.gui.gt01o_record) tabs (mtbp3cd.gui.appclinicaldata.MainWedge attribute) (mtbp3cd.gui.appfileinventory.MainWedge attribute) (mtbp3cd.gui.gt01r_inputfolder.TabFolder attribute) (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03o_define.TabDefine attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute) (mtbp3cd.gui.MainWedge attribute), [1] (mtbp3cd.MainWedge attribute) tabs_ad (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03o_define.TabDefine attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute) tabs_sd (mtbp3cd.gui.gt03o_adsl.TabADSL attribute) (mtbp3cd.gui.gt03o_define.TabDefine attribute) (mtbp3cd.gui.gt03r_inputfolder.TabInput attribute) TabStarting (class in mtbp3cd.gui.gt01r_starting) title (mtbp3cd.util.gt03plot.catPlotter attribute) tree (mtbp3cd.util.ltr.ListTree attribute)

U

update_parameters() (mtbp3cd.util.gt03plot.catPlotter method) update_sidebar_buttons_f() (in module mtbp3cd) (in module mtbp3cd.gui) util_get_define_meta_info() (mtbp3cd.gui.gt03o_adsl.TabADSL static method)

util_get_folder_meta_info() (mtbp3cd.gui.gt01r_inputfolder.TabFolder static method) (mtbp3cd.gui.gt03r_inputfolder.TabInput static method) util_show_message() (in module mtbp3cd) (in module mtbp3cd.gui)

W

with_counts (mtbp3cd.LsrTree attribute) (mtbp3cd.util.lsr.LsrTree attribute) (mtbp3cd.util.LsrTree attribute)

X

x_col (mtbp3cd.util.gt03plot.catPlotter attribute)

x_label_rotate (mtbp3cd.util.gt03plot.catPlotter attribute) x_scale_base (mtbp3cd.util.gt03plot.catPlotter attribute)

Y

y_col (mtbp3cd.util.gt03plot.catPlotter attribute)

y_scale_base (mtbp3cd.util.gt03plot.catPlotter attribute)