Index

_

__init__() (mtbp3.health.clinical.summary_by_group method) __list_tree_df() (mtbp3.ListTree method) (mtbp3.util.cdt.ListTree method) (mtbp3.util.ListTree method) __list_tree_pre() (mtbp3.ListTree method) (mtbp3.util.cdt.ListTree method) (mtbp3.util.ListTree method)

__load_list() (mtbp3.health.ectd.ctoc_by_fda method) (mtbp3.seq.ictvmslview.ictvmsl method) (mtbp3.seq.ictvvmrview.ictvvmr method) __version__ (in module mtbp3) _ROOT (in module mtbp3) (in module mtbp3.util)

A

accessLib (class in mtbp3.stdcdisc.lib) all_str_digit() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method)

assert_terms() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method)

B

baseURL (mtbp3.stdcdisc.lib.accessLib attribute) boxplot() (mtbp3.catPlotter method) (mtbp3.util.catPlotter method) (mtbp3.util.cdtg.catPlotter method)

C

catPlotter (class in mtbp3) (class in mtbp3.util) (class in mtbp3.util.cdtg) color_str() (in module mtbp3) (in module mtbp3.util) (in module mtbp3.util.cdt) count_by_group() (mtbp3.health.clinical.summary_by_group method), [1] count_species() (mtbp3.seq.ictvmslview.ictvmsl method) count_str (mtbp3.LsrTree attribute) (mtbp3.util.lsr.LsrTree attribute) (mtbp3.util.LsrTree attribute)

count_to_cate() (mtbp3.health.clinical.summary_by_group method), [1] ct_list (mtbp3.stdcdisc.lib.accessLib attribute) ct_list_titles (mtbp3.stdcdisc.lib.accessLib attribute) ct_package (mtbp3.stdcdisc.lib.accessLib attribute) ctoc (mtbp3.health.ectd.ctoc_by_fda attribute) ctoc_by_fda (class in mtbp3.health.ectd) ctoc_version (mtbp3.health.ectd.ctoc_by_fda attribute)

D

demo (mtbp3.stdiso.pdfsummary.pdfSummary attribute) df (mtbp3.catPlotter attribute) (mtbp3.health.clinical.summary_by_group attribute), [1] (mtbp3.ListTree attribute) (mtbp3.util.catPlotter attribute) (mtbp3.util.cdt.ListTree attribute) (mtbp3.util.cdtg.catPlotter attribute) (mtbp3.util.ListTree attribute)

diff_2cols_in_1df() (in module mtbp3) (in module mtbp3.util) (in module mtbp3.util.cdt) diff_2cols_in_2df() (in module mtbp3) (in module mtbp3.util) (in module mtbp3.util.cdt)

E

ectd_version (mtbp3.health.ectd.ctoc_by_fda attribute) Emt (class in mtbp3.health) (class in mtbp3.health.emt)

expected_file_lists() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method)

F

fig_size_0 (mtbp3.catPlotter attribute) (mtbp3.util.catPlotter attribute) (mtbp3.util.cdtg.catPlotter attribute) fig_size_1 (mtbp3.catPlotter attribute) (mtbp3.util.catPlotter attribute) (mtbp3.util.cdtg.catPlotter attribute) find_files() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) find_fmq() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) find_fmq_file() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) find_hlgt() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) find_hlt() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) find_llt() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) find_llt_given_pt() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) find_llt_given_soc() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) find_pt() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) find_pt_given_soc() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method)

find_rows_given_str() (mtbp3.seq.ictvmslview.ictvmsl method), [1] (mtbp3.seq.ictvvmrview.ictvvmr method), [1] find_section_given_words() (mtbp3.health.ectd.ctoc_by_fda method) find_smq() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) find_soc() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) find_soc_given_pt() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) find_term_wi_level() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) find_terms_given_fmq() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) find_terms_given_smq() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) find_terms_given_smq_sub() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) fmq_list (mtbp3.health.Emt attribute) (mtbp3.health.emt.Emt attribute) fmq_list_default (mtbp3.health.Emt attribute) (mtbp3.health.emt.Emt attribute) fmq_list_unique (mtbp3.health.Emt attribute) (mtbp3.health.emt.Emt attribute) folder_name (mtbp3.health.ectd.ctoc_by_fda attribute) (mtbp3.health.Emt attribute) (mtbp3.health.emt.Emt attribute)

G

generate_dataset() (mtbp3.health.clinical.summary_by_group method) (mtbp3.health.clinical.summary_by_group static method) generate_example_dataset() (mtbp3.catPlotter static method) (mtbp3.util.catPlotter static method) (mtbp3.util.cdtg.catPlotter static method) get_ct_codelists_df() (mtbp3.stdcdisc.lib.accessLib method) get_ct_list() (mtbp3.stdcdisc.lib.accessLib method) get_ct_package() (mtbp3.stdcdisc.lib.accessLib method) get_data() (in module mtbp3) (in module mtbp3.util) get_image() (mtbp3.stdiso.pdfsummary.pdfSummary method) get_outline_list() (mtbp3.stdiso.pdfsummary.pdfSummary method), [1] get_standards() (mtbp3.stdcdisc.lib.accessLib method)

get_summary_df() (mtbp3.stdiso.pdfsummary.pdfSummary method), [1] get_summary_string() (mtbp3.stdiso.pdfsummary.pdfSummary method), [1] grid_col (mtbp3.catPlotter attribute) (mtbp3.util.catPlotter attribute) (mtbp3.util.cdtg.catPlotter attribute) grid_kws (mtbp3.catPlotter attribute) (mtbp3.util.catPlotter attribute) (mtbp3.util.cdtg.catPlotter attribute) grid_wrap (mtbp3.catPlotter attribute) (mtbp3.util.catPlotter attribute) (mtbp3.util.cdtg.catPlotter attribute) group_col (mtbp3.catPlotter attribute) (mtbp3.util.catPlotter attribute) (mtbp3.util.cdtg.catPlotter attribute)

I

ictvmsl (class in mtbp3.seq.ictvmslview) ictvvmr (class in mtbp3.seq.ictvvmrview) infmt (mtbp3.ListTree attribute) (mtbp3.util.cdt.ListTree attribute) (mtbp3.util.ListTree attribute)

input_file (mtbp3.stdcdisc.lib.accessLib attribute), [1]

L

label (mtbp3.ListTree attribute) (mtbp3.util.cdt.ListTree attribute) (mtbp3.util.ListTree attribute) language (mtbp3.health.Emt attribute) (mtbp3.health.emt.Emt attribute) lib (in module mtbp3.stdcdisc.lib) lineplot() (mtbp3.catPlotter method) (mtbp3.util.catPlotter method) (mtbp3.util.cdtg.catPlotter method) list_files() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) (mtbp3.LsrTree method) (mtbp3.util.lsr.LsrTree method) (mtbp3.util.LsrTree method) list_files_dataframe() (mtbp3.LsrTree method) (mtbp3.util.lsr.LsrTree method) (mtbp3.util.LsrTree method) list_files_json() (mtbp3.LsrTree method) (mtbp3.util.lsr.LsrTree method) (mtbp3.util.LsrTree method) list_files_list() (mtbp3.LsrTree method) (mtbp3.util.lsr.LsrTree method) (mtbp3.util.LsrTree method) list_files_string() (mtbp3.LsrTree method) (mtbp3.util.lsr.LsrTree method) (mtbp3.util.LsrTree method)

list_files_tree() (mtbp3.LsrTree method) (mtbp3.util.lsr.LsrTree method) (mtbp3.util.LsrTree method) list_tree() (mtbp3.ListTree method) (mtbp3.util.cdt.ListTree method) (mtbp3.util.ListTree method) ListTree (class in mtbp3) (class in mtbp3.util) (class in mtbp3.util.cdt) llt (mtbp3.health.Emt attribute) (mtbp3.health.emt.Emt attribute) load_fmq() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) load_fmq_default() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) load_llt() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) load_smq() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) lsrt (mtbp3.health.Emt attribute) (mtbp3.health.emt.Emt attribute) LsrTree (class in mtbp3) (class in mtbp3.util) (class in mtbp3.util.lsr) lst (mtbp3.ListTree attribute) (mtbp3.util.cdt.ListTree attribute) (mtbp3.util.ListTree attribute)

M

make_narrow() (mtbp3.seq.ictvmslview.ictvmsl method) (mtbp3.seq.ictvmslview.ictvmsl static method) (mtbp3.seq.ictvvmrview.ictvvmr method) (mtbp3.seq.ictvvmrview.ictvvmr static method) mdhier (mtbp3.health.Emt attribute) (mtbp3.health.emt.Emt attribute) module mtbp3 mtbp3.health mtbp3.health.clinical mtbp3.health.ectd mtbp3.health.emt mtbp3.seq mtbp3.seq.ictvmslview mtbp3.seq.ictvvmrview mtbp3.stdcdisc mtbp3.stdcdisc.lib mtbp3.stdiso mtbp3.stdiso.pdfsummary mtbp3.util mtbp3.util.cdt mtbp3.util.cdtg mtbp3.util.lsr month (mtbp3.health.Emt attribute), [1] (mtbp3.health.emt.Emt attribute), [1] msl (mtbp3.seq.ictvmslview.ictvmsl attribute), [1] msl_column_names (mtbp3.seq.ictvmslview.ictvmsl attribute), [1] msl_file_fullpath (mtbp3.seq.ictvmslview.ictvmsl attribute) msl_file_path (mtbp3.seq.ictvmslview.ictvmsl attribute) msl_version (mtbp3.seq.ictvmslview.ictvmsl attribute) mtbp3 module

mtbp3.health module mtbp3.health.clinical module mtbp3.health.ectd module mtbp3.health.emt module mtbp3.seq module mtbp3.seq.ictvmslview module mtbp3.seq.ictvvmrview module mtbp3.stdcdisc module mtbp3.stdcdisc.lib module mtbp3.stdiso module mtbp3.stdiso.pdfsummary module mtbp3.util module mtbp3.util.cdt module mtbp3.util.cdtg module mtbp3.util.lsr module

O

outfmt (mtbp3.LsrTree attribute) (mtbp3.util.lsr.LsrTree attribute) (mtbp3.util.LsrTree attribute)

outline_list (mtbp3.stdiso.pdfsummary.pdfSummary attribute), [1]

P

path (mtbp3.LsrTree attribute) (mtbp3.util.lsr.LsrTree attribute) (mtbp3.util.LsrTree attribute) pdf_path (mtbp3.stdiso.pdfsummary.pdfSummary attribute) pdfSummary (class in mtbp3.stdiso.pdfsummary) point_position (mtbp3.catPlotter attribute) (mtbp3.util.catPlotter attribute) (mtbp3.util.cdtg.catPlotter attribute)

pp (mtbp3.stdiso.pdfsummary.pdfSummary attribute) prelst (mtbp3.ListTree attribute) (mtbp3.util.cdt.ListTree attribute) (mtbp3.util.ListTree attribute) pt_size (mtbp3.catPlotter attribute) (mtbp3.util.catPlotter attribute) (mtbp3.util.cdtg.catPlotter attribute)

R

readme_file (mtbp3.health.Emt attribute) (mtbp3.health.emt.Emt attribute)

S

save_fmq_consolidated_list_csv() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) show_ctoc_tree() (mtbp3.health.ectd.ctoc_by_fda method) show_fmq_tree() (mtbp3.health.Emt method) (mtbp3.health.emt.Emt method) show_outline_tree() (mtbp3.stdiso.pdfsummary.pdfSummary method), [1] smq_content (mtbp3.health.Emt attribute) (mtbp3.health.emt.Emt attribute)

smq_list (mtbp3.health.Emt attribute) (mtbp3.health.emt.Emt attribute) summarize_1nc_by_2group() (in module mtbp3) (in module mtbp3.util) (in module mtbp3.util.cdt) summary (mtbp3.stdiso.pdfsummary.pdfSummary attribute), [1] summary_by_group (class in mtbp3.health.clinical) summary_label (mtbp3.stdiso.pdfsummary.pdfSummary attribute), [1]

T

title (mtbp3.catPlotter attribute) (mtbp3.util.catPlotter attribute) (mtbp3.util.cdtg.catPlotter attribute)

tree (mtbp3.ListTree attribute) (mtbp3.util.cdt.ListTree attribute) (mtbp3.util.ListTree attribute)

U

update_msl() (mtbp3.seq.ictvmslview.ictvmsl method), [1] update_parameters() (mtbp3.catPlotter method) (mtbp3.util.catPlotter method) (mtbp3.util.cdtg.catPlotter method)

update_vmr() (mtbp3.seq.ictvvmrview.ictvvmr method), [1]

V

version_number (mtbp3.health.Emt attribute) (mtbp3.health.emt.Emt attribute) version_number_us (mtbp3.health.Emt attribute) (mtbp3.health.emt.Emt attribute)

vmr (mtbp3.seq.ictvvmrview.ictvvmr attribute), [1] vmr_column_names (mtbp3.seq.ictvvmrview.ictvvmr attribute), [1] vmr_file_fullpath (mtbp3.seq.ictvvmrview.ictvvmr attribute) vmr_file_path (mtbp3.seq.ictvvmrview.ictvvmr attribute) vmr_version (mtbp3.seq.ictvvmrview.ictvvmr attribute)

W

with_counts (mtbp3.LsrTree attribute) (mtbp3.util.lsr.LsrTree attribute) (mtbp3.util.LsrTree attribute)

X

x_col (mtbp3.catPlotter attribute) (mtbp3.util.catPlotter attribute) (mtbp3.util.cdtg.catPlotter attribute) x_label_rotate (mtbp3.catPlotter attribute) (mtbp3.util.catPlotter attribute) (mtbp3.util.cdtg.catPlotter attribute)

x_scale_base (mtbp3.catPlotter attribute) (mtbp3.util.catPlotter attribute) (mtbp3.util.cdtg.catPlotter attribute)

Y

y_col (mtbp3.catPlotter attribute) (mtbp3.util.catPlotter attribute) (mtbp3.util.cdtg.catPlotter attribute) y_scale_base (mtbp3.catPlotter attribute) (mtbp3.util.catPlotter attribute) (mtbp3.util.cdtg.catPlotter attribute)

year (mtbp3.health.Emt attribute), [1] (mtbp3.health.emt.Emt attribute), [1]